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Microbes unculturable in vitro remain diagnostically challenging, dependent historically on clinical findings, histology, or targeted molecular detection. We applied whole-genome sequencing directly from tissue to diagnose infections with mycobacteria (leprosy) and parasites (coenurosis). Direct pathogen DNA sequencing provides flexible solutions to diagnosis of difficult pathogens in diverse contexts.

Original publication

DOI

10.1093/ofid/ofac428

Type

Journal article

Journal

Open Forum Infect Dis

Publication Date

09/2022

Volume

9

Keywords

Taenia, coenurosis, leprosy, mycobacteria, whole genome sequencing