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Publications

Multiple introductions of NRCS-A Staphylococcus capitis to the neonatal intensive care unit drive neonatal bloodstream infections: a case-control and environmental genomic survey.

Lees EA. et al, (2025), Microb Genom, 11

Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data.

Pascoe B. et al, (2024), J Infect, 89

Independent repeated mutations within the alphaviruses Ross River virus and Barmah Forest virus indicates convergent evolution and past positive selection in ancestral populations despite ongoing purifying selection

Pyke AT. et al, (2024), Virus Evolution

Evaluating the effects of virulence genotype, swarming motility, and multi-locus sequence types of Escherichia coli on layer chicken embryos

Ovi F. et al, (2024), Journal of Applied Microbiology, 135

Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach.

CRyPTIC Consortium None., (2024), Nat Commun, 15

Identifying direct risk factors in UK Biobank with simultaneous Bayesian-frequentist model-averaged hypothesis testing using Doublethink

Arning N. et al, (2024)

Common loss of far-red light photoacclimation in cyanobacteria from hot and cold deserts: a case study in the Chroococcidiopsidales.

Antonaru LA. et al, (2023), ISME Commun, 3

The molecular reach of antibodies determines their SARS-CoV-2 neutralisation potency

Huhn A. et al, (2023)

A second update on mapping the human genetic architecture of COVID-19.

COVID-19 Host Genetics Initiative None., (2023), Nature, 621, E7 - E26

Laboratory diagnosed microbial infection in English UK Biobank participants in comparison to the general population.

Hilton B. et al, (2023), Sci Rep, 13

Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis.

CRyPTIC Consortium None., (2022), Eur Respir J, 60

High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region.

Dreyer V. et al, (2022), Genome Med, 14

A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics

Crook DW. et al, (2022), PLoS biology, 20

A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics.

The CRyPTIC Consortium None., (2022), PLoS Biol, 20

A first update on mapping the human genetic architecture of COVID-19.

COVID-19 Host Genetics Initiative None., (2022), Nature, 608, E1 - E10

Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms.

The CRyPTIC Consortium None., (2022), PLoS Biol, 20

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes.

Hunt M. et al, (2022), Genome Biol, 23

A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates.

Fowler PW. et al, (2022), Elife, 11

Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape.

Muloi DM. et al, (2022), Nat Microbiol, 7, 581 - 589

Evolutionary Processes Driving the Rise and Fall of Staphylococcus aureus ST239, a Dominant Hybrid Pathogen.

Gill JL. et al, (2021), mBio, 12

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