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Publications

Deploying Metagenomics to Characterize Microbial Pathogens During Outbreak of Acute Febrile Illness Among Children in Tanzania.

Mziray SR. et al, (2025), Pathogens, 14

The genome sequence of varicella-zoster virus (Varicellovirus humanalpha3) obtained by metagenomics from a patient presenting with an exanthem rash.

Musundi S. et al, (2025), Microbiol Resour Announc

Hepatitis B Core-Related Antigen Point-of-Care Tests as a Risk Stratification Tool for Treatment Eligibility: Experience From Kenya.

Downs LO. et al, (2025), Open Forum Infect Dis, 12

Coxsackievirus A24 variant whole genome sequencing from clinical samples using a three overlapping amplicons strategy

Morobe JM. et al, (2025)

Emergence and transmission dynamics of the FY.4 Omicron variant in Kenya.

Musundi S. et al, (2025), Virus Evol, 11

Epidemiological dynamics of Influenza B virus across multiple seasons in Kenya and Uganda inferred from sequence data, 2010-2021

Nyarango B. et al, (2025)

GRAPEVNE - Graphical Analytical Pipeline Development Environment for Infectious Diseases.

Brittain J-S. et al, (2025), Wellcome Open Res, 10

Identification of coxsackievirus A24 variant during an acute hemorrhagic conjunctivitis outbreak in coastal Kenya, 2024

Lambisia A. et al, (2025)

Identification of coxsackievirus A24 variant during an acute hemorrhagic conjunctivitis outbreak in coastal Kenya, 2024.

Lambisia AW. et al, (2025), Wellcome Open Res, 10

Hepatitis B core-related antigen (HBcrAg) point-of-care tests as a risk stratification tool: experience from Kenya

Downs LO. et al, (2024)

Where do those data go? Reuse of screening results from clinical trials to estimate population prevalence of HBV infection in adults in Kilifi, Kenya.

Downs LO. et al, (2023), J Virus Erad, 9

New SARS-CoV-2 Omicron Variant with Spike Protein Mutation Y451H, Kilifi, Kenya, March-May 2023.

Mwanga MJ. et al, (2023), Emerg Infect Dis, 29, 2376 - 2379

Symptom prevalence and secondary attack rate of SARS-CoV-2 in rural Kenyan households: A prospective cohort study.

Gallagher KE. et al, (2023), Influenza Other Respir Viruses, 17

Temporal distribution and clinical characteristics of the Alpha, Delta and Omicron SARS-CoV-2 variants of concern in Laikipia, Kenya: institutional and community-based genomic surveillance

W. Lambisia A. et al, (2023)

A pan-African pathogen genomics data sharing platform to support disease outbreaks.

Christoffels A. et al, (2023), Nat Med, 29, 1052 - 1055

High-throughput sequencing approaches applied to SARS-CoV-2

Ong'era EM. et al, (2023), Wellcome Open Research, 8, 150 - 150

Toward a global virus genomic surveillance network.

Hill V. et al, (2023), Cell Host Microbe

Characterising paediatric mortality during and after acute illness in Sub-Saharan Africa and South Asia: a secondary analysis of the CHAIN cohort using a machine learning approach.

Childhood Acute Illness and Nutrition (CHAIN) Network None., (2023), EClinicalMedicine, 57

SARS-CoV-2 Omicron variant of concern in the Seychelles: Introduction and spread

Morobe JM. et al, (2023), Wellcome Open Research, 8, 105 - 105

Detection of a SARS-CoV-2 Beta-like variant in coastal Kenya after more than a year of disappearance

Lambisia AW. et al, (2023), Wellcome Open Research, 8, 34 - 34

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